Isolate | Source | Concomitant gonococcal infection | Sex | Strain type (fine type) | Accession number |
---|---|---|---|---|---|
Urogenital Neisseria meningitidis isolates | |||||
cc11 | |||||
NM8633 | Rectum | No | M | C: P1.5-1,10-8: F3-6: ST-11 | ERR585992 |
cc23 | |||||
NM10762* | Rectum | No | M | Y: P1.5-1,10-1: F4-1: ST-1655 | ERR586012 |
cc41/44 | |||||
NM8736 | Rectum | J10 | M | B: P1.17-1,23: F1-5: ST-1097 | ERR585996 |
NM9853 | Urethra | No | M | B: P1.7-2,4: F1-5: ST-41 | ERR586003 |
NM10833 | Rectum | No | M | B: P1.5-2,10-1: F5-9: ST-10867 | ERR586014 |
cc269 | |||||
NM8525* | Urethra | No | M | B: P1.19-1,15-11: F5-1: ST-269 | ERR585987 |
NM8468 | Rectum | No | M | B: P1.19,15-1: F1-5: ST-10864 | ERR585986 |
NM8583 | Rectum | No | M | B: P1.19,15-1: F1-5: ST-10864 | ERR585990 |
NM8726 | Rectum | No | M | B: P1.19,15-1: F1-5: ST-10864 | ERR585995 |
cc1157 | |||||
NM8572 | Rectum | No | M | B: P1.7-12,14: F1-7: ST-10865 | ERR585989 |
NM10421 | Rectum | K11 | M | E: P1.17,9: F1-15: ST-3203 | ERR586010 |
NM10989 | Rectum | No | M | Z: P1.21-7,16: F5-36: ST-1157 | ERR586018 |
cc4821 | |||||
NM8652 | Rectum | No | M | B: P1.20,23: F3-36: ST-3200 | ERR585993 |
NM9658 | Rectum | A1 | M | B: P1.20,23-2: F3-36: ST-3200 | ERR586002 |
NM10364 | Rectum | B2 | M | B: P1.17-6,23: F3-36: ST-3200 | ERR586009 |
ST-1976 (cc-) | |||||
NM9071* | Rectum | No | M | B: P1.22-1,14: F5-2: ST-1976 | ERR585998 |
Others | |||||
NM8307 | Rectum | No | M | B: P1.12,23: F3-9: ST-5417 | ERR585984 |
NM9124 | Rectum | D4 | M | Z: P1.22,14-13: F5-7: ST-10866 | ERR585999 |
NM10492 | Urethra | No | M | Z: P1.18,25-15: F5-7: ST-3882 | ERR586011 |
NM10763 | Urethra | L12 | M | Z: P1.22-4,14-13: F5-7: ST-10866 | ERR586013 |
NM8558 | Rectum | G7 | M | B: P1.12,16: F1-5: ST-897 | ERR585988 |
NM8674 | Rectum | H8 | M | cnl: P1.18-4,25: F4-1: ST-1136 (cc1136) | ERR585994 |
NM8602 | Rectum | E5 | M | cnl: P1.19-2,13-1: F1-62: ST-2153 (cc162) | ERR585991 |
Invasive meningococcal disease N. meningitidis isolates | |||||
cc11 | |||||
NM9954* | Joint fluid | Unknown | F | C: P1.5-1,10-8: F4-1: ST-11 | ERR586005 |
LNP27256 | Unknown | Unknown | M | C: P1.5-1,10-8: F3-6: ST-11 | PRJNA215157 |
cc23 | |||||
NM10313* | Blood | Unknown | M | Y: P1.5-2,10-1: F4-1: ST-10732 | ERR586008 |
cc41/44 | |||||
NM8250 | Blood | Unknown | F | B: P1.7-2,13-9: F1-25: ST-8052 | ERR585983 |
NM9062 | Blood | Unknown | F | B: P1.7-2,4: F1-5: ST-41 | ERR585997 |
NM9565 | Joint fluid | Unknown | M | B: P1.12-1,9: F1-5: ST-10698 | |
NM10864 | Blood | Unknown | M | B: P1.7-2,4: F1-5: ST-2314 | ERR586017 |
NM10863 | Blood | Unknown | M | B: P1.7-2,4: F3-9: ST-10868 | ERR586016 |
NM11067 | CSF | Unknown | M | B: P1.17,16-3: F5-7: ST-136 | ERR586019 |
cc269 | |||||
NM10052* | CSF | Unknown | M | B: P1.22,9: F4-1: ST-1161 | ERR586006 |
NM10053* | Blood | Unknown | M | B: P1.22,9: F4-1: ST-1161 | ERR586007 |
cc4821 | |||||
M14 240580 | Unknown | Unknown | Unknown | B: P1.17-6,23: F3-36: ST-3200 | ERR985730 |
053442 | CSF | Unknown | Unknown | C: P1.7-2,14: F3-3: ST-4821 | CP000381 |
ST-1976 (cc-) | |||||
NM9905* | Blood | Unknown | M | B: P1.22-1,14: F5-2: ST-1976 | ERR586004 |
*Isolates containing aniA gene with premature stop codon and therefore a putatively non-functional aniA gene. All of the remaining isolates contained putatively functional aniA genes consistent with these not containing premature stop codons.
A1: concomitant rectal and urethral N. gonorrhoeae isolates, both ST-9363, NG MAST 2992 (accession numbers: SAMN04624289 and SAMN04624250).
B2: rectal N. gonorrhoeae ST-11516, new NG MAST (SAMN04623631).
C3: concomitant rectal (ST-1584; NG MAST ST-4528, SAMN04624549) and urethral (ST-8122; NG-MAST ST-292, SAMN04621973) N. gonorrhoeae isolates, N. meningitidis isolates were however unavailable.
D4: urethral N. gonorrhoeae (isolate unavailable).
E5: urethral and rectal N. gonorrhoeae isolates only one available for analysis ST-7363, NG MAST 2400 (SAMN04624221).
G7: nasopharyngeal N. gonorrhoeae ST-7363, NG MAST 2400 (SAMN04624196).
H8: nasopharyngeal N. gonorrhoeae ST-1901, NG MAST 1407 (SAMN04624415).
I9: rectal N. gonorrhoeae ST-7360, NG MAST 1407 (SAMN04624571).
J10: urethral (ST-11516 NG MAST 1780, SAMN04624544), nasopharyngeal and rectal, (both ST-1901 NG MAST 1407, SAMN04624515 and SAMN04624532) N. gonorrhoeae.
K11: nasopharyngeal N. gonorrhoeae ST-11463, NG MAST 2992 (SAMN04621963).
L12: rectal N. gonorrhoeae ST-7363, NG MAST 10149 (SAMN04623685).
CSF, cerebrospinal fluid.