Discrimination of 69 genotype E wtCT and nvCT isolates from 2006 using MLST and ompA sequencing
| hctB | CT058 | CT144 | CT172 | pbpB | |
| wtCT (n=1) | 1 | 2 | 6 | 2 | 2 |
| wtCT (n=4) | 1 | 19 | 7 | 2 | 1 |
| wtCT (n=1) | 1 | 19 | 7 | 2 | 35 |
| wtCT (n=4) | 5 | 19 | 6 | 2 | 2 |
| wtCT (n=1) | 7 | 19 | 7 | 2 | 1 |
| wtCT (n=2) | 7 | 19 | 7 | 2* | 36 |
| wtCT (n=3) | 7 | 19 | 14 | 2 | 1† |
| wtCT (n=1) | 22 | 19 | 7 | 2 | 1 |
| wtCT (n=2) | 23 | 19 | 14 | 2 | 1 |
| wtCT (n=1) | 23 | 19 | 17 | 2 | 1 |
| wtCT (n=1) | 23 | 19 | 17 | 2 | 38 |
| wtCT (n=1) | 24 | 19 | 1 | 1 | 2 |
| wtCT (n=3) | 24 | 19 | 7 | 2 | 1 |
| wtCT (n=1) | 25 | 19 | 7 | 2 | 1 |
| wtCT (n=1) | NT‡ | 19 | 7 | 2 | 1 |
| wtCT (n=1) | NT | 19 | 17 | NT | NT |
| nvCT (n=41) | 21 | 19 | 1 | 2 | 1§ |
↵* One isolate displayed two different bands in the PCR reaction; one not typeable and one type 2 suggesting a double infection.
↵† One isolate had too short sequence product, but was determined to be type 1 or 2.
↵‡ NT, not typeable.
↵§ One isolate had too short sequence product, but was determined to be type 1, 2 or 38.
MLST, multilocus sequence typing; nvCT, new variant of C trachomatis; wtCT, wild-type C trachomatis.