Analysis of the six discrepant CT participant results
| Participant | GeneXpert | Specimen | cobas | In-house PCR |
| 1 | Detected | Urine | ND | Pooled |
| Throat swab | ND | specimen | ||
| Rectal swab | ND | Detected | ||
| 2 | Detected | Urine | ND | ND |
| Throat swab | ND | ND | ||
| Rectal swab | ND | Detected | ||
| 3 | ND (detected on repeat) | Urine | ND | ND |
| Throat swab | ND | ND | ||
| Rectal swab | Detected | Detected | ||
| 4 | ND (ND on repeat) | Urine | ND | ND |
| Throat swab | ND | ND | ||
| Rectal swab | Detected | Detected | ||
| 5 | ND (ND on repeat) | Urine | ND | ND |
| Throat swab | ND | ND | ||
| Rectal swab | Detected | Detected | ||
| 6 | ND (ND on repeat) | Urine | ND | ND |
| Throat swab | Detected | ND | ||
| Rectal swab | ND | ND |
CT, Chlamydia trachomatis; ND, not detected.