PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

Stéphane Guindon; Franck Lethiec; Patrice Duroux; Olivier Gascuel

doi:10.1093/nar/gki352

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W557-9. doi: 10.1093/nar/gki352.

Authors

Stéphane Guindon¹, Franck Lethiec, Patrice Duroux, Olivier Gascuel

Affiliation

¹ Bioinformatics Institute and Allan Wilson Centre, University of Auckland Private Bag 92019, Auckland, New Zealand.

Abstract

PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the user with a number of options, e.g. nonparametric bootstrap and estimation of various evolutionary parameters, in order to perform comprehensive phylogenetic analyses on large datasets in reasonable computing time. The server and its documentation are available at http://atgc.lirmm.fr/phyml.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Algorithms*
Internet
Likelihood Functions
Phylogeny*
Sequence Analysis, DNA / methods*
Sequence Analysis, Protein / methods*
Software*
Time Factors
User-Computer Interface