Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences
AGCL Speksnijder, GA Kowalchuk… - Applied and …, 2001 - Am Soc Microbiol
ABSTRACT A defined template mixture of seven closely related 16S-rDNA clones was used
in a PCR-cloning experiment to assess and track sources of artifactual sequence variation in …
in a PCR-cloning experiment to assess and track sources of artifactual sequence variation in …
Genetic Diversity of the Biofilm CoveringMontacuta ferruginosa (Mollusca, Bivalvia) as Evaluated by Denaturing Gradient Gel Electrophoresis Analysis and Cloning of …
DC Gillan, AGCL Speksnijder, G Zwart… - Applied and …, 1998 - Am Soc Microbiol
The shell of the bivalve Montacuta ferruginosa, a symbiont living in the burrow of an
echinoid, is covered with a rust-colored biofilm. This biofilm includes different morphotypes …
echinoid, is covered with a rust-colored biofilm. This biofilm includes different morphotypes …
Lactobacillus iners-dominated vaginal microbiota is associated with increased susceptibility to Chlamydia trachomatis infection in Dutch women: a case–control study
R Van Houdt, B Ma, SM Bruisten… - Sexually transmitted …, 2018 - sti.bmj.com
Introduction This prospective study aimed to study the composition and structure of the
vaginal microbiota prior to Chlamydia trachomatis infection. Methods A nested case–control …
vaginal microbiota prior to Chlamydia trachomatis infection. Methods A nested case–control …
Anal and penile high-risk human papillomavirus prevalence in HIV-negative and HIV-infected MSM
F Van Aar, SH Mooij, MAB Van Der Sande… - Aids, 2013 - journals.lww.com
Objective: Anal and penile high-risk human papillomavirus (HPV) infection is associated
with anogenital cancer, which is especially common in HIV-infected MSM. We assessed …
with anogenital cancer, which is especially common in HIV-infected MSM. We assessed …
Pectobacterium carotovorum subsp. carotovorum can cause potato blackleg in temperate climates
EG de Haan, TCEM Dekker-Nooren… - European Journal of …, 2008 - Springer
It is well established that the pectinolytic bacteria Pectobacterium atrosepticum (Pca) and
Dickeya spp. are causal organisms of blackleg in potato. In temperate climates, the role of …
Dickeya spp. are causal organisms of blackleg in potato. In temperate climates, the role of …
Rapid and reliable discrimination between Shigella species and Escherichia coli using MALDI-TOF mass spectrometry
A Paauw, D Jonker, G Roeselers, JME Heng… - International Journal of …, 2015 - Elsevier
E. coli–Shigella species are a cryptic group of bacteria in which the Shigella species are
distributed within the phylogenetic tree of E. coli. The nomenclature is historically based and …
distributed within the phylogenetic tree of E. coli. The nomenclature is historically based and …
Shifts in the dominant populations of ammonia-oxidizing b-subclass Proteobacteria along the eutrophic Schelde estuary
MJM de Bie, AGCL Speksnijder, GA Kowalchuk… - Aquatic Microbial …, 2001 - int-res.com
The community structure of ammonia-oxidizing bacteria of the b-subclass Proteobacteria
was investigated with respect to environmental gradients along the Schelde, a eutrophic …
was investigated with respect to environmental gradients along the Schelde, a eutrophic …
Recreational drug use during sex and sexually transmitted infections among clients of a city sexually transmitted infections clinic in Amsterdam, the Netherlands
M Heiligenberg, PR Wermeling… - Sexually transmitted …, 2012 - journals.lww.com
Background: Recreational drug use is associated with high-risk sexual behavior and
sexually transmitted infections (STIs). We assessed the prevalence of drug use during sex …
sexually transmitted infections (STIs). We assessed the prevalence of drug use during sex …
[HTML][HTML] The effects of spatial and temporal replicate sampling on eDNA metabarcoding
Background The heterogeneous nature of environmental DNA (eDNA) and its effects on
species detection and community composition estimates has been highlighted in several …
species detection and community composition estimates has been highlighted in several …
The effect of HIV infection on anal and penile human papillomavirus incidence and clearance: a cohort study among MSM
SH Mooij, DK Van Santen, RB Geskus… - Aids, 2016 - journals.lww.com
Objectives: A large portion of anogenital cancers is caused by high-risk human
papillomavirus (hrHPV) infections, which are especially common in HIV-infected men. We …
papillomavirus (hrHPV) infections, which are especially common in HIV-infected men. We …